Rat Genes

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    • Core A: Administrative Core
    • Core B: Breeding Core
    • Core C: Sequencing Core
    • Core D: Pilot Projects
  • NIDA Research
    • P50: Neurogenetic Substrates of Cocaine Addiction
    • P50: Socially-acquired nicotine self-administration
    • P50: Association between behavioral regulation and cocaine cue preference
    • P50: Network-based analysis
    • P50: Genetic Studies of Incentive Salience
    • U01: Single-cell resolution analysis of chromatin accessibility and gene expression
    • U01: Genetic Features of Delay Discounting in an HS Rat Model
    • U01: Genetic Basis of Opioid Dependence Vulnerablility
    • U01: Genetics of Novelty seeking and Propensity for Drug Abuse in Outbred Rats
    • U01: Genomic analysis of avoidance learning in addiction
    • U01: Genetics of Compulsive Cocaine Intake in Rats
    • U01: Genetics of Compulsive Oxycodone Intake in HS Rats
  • Affiliated Research
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    • Ancillary Phenotyping
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  • eQTL mapping
  • Meetings
    • NIDA Center for GWAS in Outbred Rats – 6th Annual Retreat
    • NIDA Center for GWAS in Outbred Rats – 5th Annual Retreat
    • Complex Traits Consortium / Rat Genomics 17th Annual Meeting
    • NIDA Center for GWAS in Outbred Rats – 4th Annual Retreat
    • NIDA Center for GWAS in Outbred Rats – Third Annual Retreat
    • Rat Genetics and Genomics for Psychiatric Disorders and Addiction
    • NIDA Center for GWAS in Outbred Rats 2nd Annual Retreat
    • Retreat September 2014
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    • Research Experiences for High School and Undergraduate Students
      • Summer 2020: Research Experiences for High School and Undergraduate Students
      • Summer 2018: Research Experiences for High School and Undergraduate Students
      • Summer 2017: Research Experiences for High School and Undergraduate Students
      • Summer 2016: Research Experiences for High School and Undergraduate Students
      • Summer 2015: Research Experiences for High School and Undergraduate Students
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Meetings

PIs meet monthly to discuss progress and share data.

 

PAST MEETINGS

NIDA Center for GWAS in Outbred Rats. Third Annual Retreat. San Diego, February 6, 2017

NIDA Center for GWAS in Outbred Rats. Second Annual Retreat. Chicago, October 17, 2015

Rat Genetics and Genomics for Psychiatric Disorders and Addiction. Workshop. Chicago, June 29, 2015.

NIDA Center for GWAS in Outbred Rats. First Annual Retreat. Chicago, October 24, 2014

 

 

Updated 05/08/2018

News

  • • The 2021 Complex Trait Consortium (CTC) meeting was held virtually from Manchester, UK from September 1-3, 2021.
  • • mRatBN7.2/rn7 browser is available at UCSC
  • • RatGTEx portal is live! RatGTEx portal provides gene expression and eQTL data for different rat tissues.
  • • Dr. Palmer and Dr. Leah Solberg Woods presented at the Quantitative Genomics for Space Biology Workshop
  • • Olivier George, PhD is featured by several media outlets
  • • RGD is joining GRC, new rat genome assembly renamed as mRatBN7

RSS Palmer Lab

  • Manuscript co-authored by Dr. Sandra Sanchez-Roige and Dr. Abraham Palmer accepted for publication in Molecular Psychiatry September 14, 2021
  • Palmer Lab Members present at the 2021 Complex Trait Consortium / Rat Genomics Online Meeting September 1, 2021
  • $200,000 Supplement to Center for GWAS in outbred mice awarded to make the center’s database more FAIR (“Findable Accessible Interoperable Reusable”) August 31, 2021
  • A study co-authored by Dr. Abraham Palmer and Dr. Sandra Sanchez-Roige published on Nature Neuroscience August 27, 2021
  • Dr. Palmer is a co-investigator on NIH/NIDCD grant August 19, 2021
  • Clara Ortez joins the Palmer Lab August 17, 2021

Events

7th Annual Retreat for the NIDA center for GWAS in outbred rats 11/04/21 8 am - 2 pm PST on-line
18th Complex Trait Consortium (CTC) meeting 2021 09/01/21 on-line
6th Annual On-line Retreat for the NIDA Center for GWAS in HS Rats 11/01/20 San Diego, CA, UCSD campus, Biomedical Research Facility BRF2
5th Annual Retreat for the NIDA center for GWAS in outbred rats 06/12/19 UCSD campus, Biomedical Research Facility
17th Annual Meeting of the Complex Trait Community 06/09/19 University of California San Diego
See all events

Links and Resources

• Rat genome browser at UCSC mRatBN7.2/rn7
• Rat Genome Database (RGD)
• Rat Resource & Research Center (RRRC). Rat Models
• Rat Genome Project (RGP)
• The Hybrid Rat Diversity Panel (HRDP)
• GeneNetwork2, a framework for web based genetics
• Cellular Biology of Addiction Course by the Cold Spring Harbor Meeting and Courses program.
• The Optogenetics and Transgenic Technology Core at NIDA.
• National Institute on Drug Abuse (NIDA)
• Mouse Genome Informatics (MGI)
• Omics Portal for Addiction Research (OPAR)
• ZSTAT: Genome-Wide Transcriptional Network Architecture of Drug Use Disorders
• Rat models of human diseases and related phenotypes: a systematic inventory of the causative genes

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