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You can find the mRatNor1.1 assembly at ftp://ftp.sanger.ac.uk/pub/users/kj2/Darwin. The files are: mRatNor1_1.curated_primary.20200424.facontaining the primary assembly. The scaffold names need to be translated using  mRatNor1_1.chromosome.list.csvwhere the entries refer to <scaffold_name>,<chr_name>,<yes if it’s the main part of the chromosome/no if it’s an unlocalised part of the chromosome>  mRatNor1_1.all_haplotigs.20200424.faContains the alternative assembly. CAVEAT: This is the current assembly not … Read more…

The P50 Genes &  Addiction NIDA Center for GWAS in Outbred Rats is offering a Research  Experiences for High School and Undergraduate Students (REHU) program  this summer. Details are here.

The P50 Center’s proposal, titled “Genome-wide mapping of gene-microbiome interaction: implication in behavior”, has been selected for funding by the UC San Diego’s Center for Microbiome Innovation. The purpose of these seed grants is to jump start microbiome research in San Diego and spark new research collaborations.

Pilot Studies in HS Outbred Rats Supporting Drug Abuse Research Center of Excellence The NIDA center for GWAS in outbred rats (P50DA037844) focuses on quantitative genetic studies of a range of psychologically complex drug abuse-related phenotypes in outbred rats. In order to broaden the impact of this center and to promote rat genetics studies we … Read more…