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mRatBN7.2/rn7 browser is available at UCSC

September 30, 2024June 24, 2021 by Oksana Polesskaya

UCSC genome browser now has mRatBN7.2 and they named it rn7!
http://genome.ucsc.edu/cgi-bin/hgTracks?db=rn7

Categories Uncategorized
RatGTEx portal is live! RatGTEx portal provides gene expression and eQTL data for different rat tissues.
The 2021 Complex Trait Consortium (CTC) meeting was held virtually from Manchester, UK from September 1-3, 2021.

Links & Resources

Rat Genomic Resources and Tools

• RatGTEx Portal
• Ratlas snRNA-seq datasets
• PhenoGen Informatics
• Rat genome browser at UCSC
 mRatBN7.2/rn7
• Rat Genome Database (RGD)
• Rat Genome Project (RGP)
• The Hybrid Rat Diversity Panel
 (HRDP)

Databases and Addiction Resources

• Center for GWAS in Outbred Rats
 Database (C-GORD)
• Preclinical Addiction Research
 Consortium (PARC)
 Addiction Biobanks:
  • Alcohol
  • Cocaine
  • Oxycodone
• Behavioral & Substance Use
 Disorder Portal (RGD)
• Omics Portal for Addiction Research  (OPAR)
• ZSTAT: Genome-Wide
 Transcriptional Network Architecture
 of Drug Use Disorders

Genomic and Model Organism Resources

• Rat Resource & Research Center
 (RRRC) Rat Models
• The Optogenetics and Transgenic
 Technology Core at NIDA
• GeneNetwork2, a framework for
 web-based genetics
• Alliance of Genome Resources
• Mouse Genome Informatics (MGI)
• "Rat models of human diseases and  related phenotypes: a systematic
 inventory of the causative genes"
 (table)
• Mouse Phenome Database
• GeneWeaver
• GenomeMUSter

Educational Resources

• Cellular Biology of Addiction Course  (Cold Spring Harbor Laboratory:
 Meetings and Courses Program)
• National Institute on Drug Abuse
 (NIDA)

Upcoming Events

Neuroscience 2025
San Diego

November 15-19, 2025

San Diego Convention Center
San Diego, California

Join nearly half a million neuroscientists from around the world at the premier global neuroscience event.

11th Annual HS Rats Retreat

November 20, 2025

UC San Diego
La Jolla, California

Get ready for Ratstock—the 11th Annual HS Rats Retreat for the Center for Genetics, Genomics, and Epigenetics of Substance Use Disorders in Outbred Rats

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