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First version of shinyapp to access HS rats database hosted on the cloud

The Research Experiences for High School and Undergraduate Students (REHU) program of the P50 Genes & Addiction NIDA Center for GWAS in Outbred Rats provided four participants an opportunity to conduct 10-week summer research projects with their mentors in three laboratories of the Center. In addition, REHU students attended journal club, wrote a research paper, … Read more…

UCSC genome browser now has mRatBN7.2 and they named it rn7!http://genome.ucsc.edu/cgi-bin/hgTracks?db=rn7

We are creating the RatGTEx portal to provide gene expression and eQTL data for different rat tissues. The pilot version of this portal is available at ratgtex.org. In addition to data downloads, it has interactive visualizations that can display results for queried genes, variants, and tissues. It will specify a standard processing pipeline and data formats … Read more…

The Research Experiences for High School and Undergraduate Students (REHU) program of the P50 Genes & Addiction NIDA Center for GWAS in Outbred Rats provided four participants an opportunity to conduct 10-week summer research projects with their mentors in three laboratories of the Center. In addition, REHU students attended journal club, wrote a research paper, … Read more…

The rat and RGD are invited to join the GRC! The name mRatBN7 was selected for this reference, to maintain similarity to the other genomes being sequenced by the VGP and Tree of Life Program, while adding our request for incorporating the strain name. mRatBN7 will be picked up by Ensembl for an initial rapid … Read more…

You can find the mRatNor1.1 assembly at ftp://ftp.sanger.ac.uk/pub/users/kj2/Darwin. The files are: mRatNor1_1.curated_primary.20200424.facontaining the primary assembly. The scaffold names need to be translated using  mRatNor1_1.chromosome.list.csvwhere the entries refer to <scaffold_name>,<chr_name>,<yes if it’s the main part of the chromosome/no if it’s an unlocalised part of the chromosome>  mRatNor1_1.all_haplotigs.20200424.faContains the alternative assembly. CAVEAT: This is the current assembly not … Read more…

The P50 Genes &  Addiction NIDA Center for GWAS in Outbred Rats is offering a Research  Experiences for High School and Undergraduate Students (REHU) program  this summer. Details are here.

The P50 Center’s proposal, titled “Genome-wide mapping of gene-microbiome interaction: implication in behavior”, has been selected for funding by the UC San Diego’s Center for Microbiome Innovation. The purpose of these seed grants is to jump start microbiome research in San Diego and spark new research collaborations.